Publications

63. Molecular probe technology detects bacteria without culture.

Richard W Hyman, Robert P St.Onge, Hyunsung Kim, John S Tamaresis, Molly Miranda, Ana Maria Aparicio, Marilyn Fukushima, Nader Pourmand, Linda C Giudice and Ronald W Davis. BMC Microbiology, 2012.

[Publisher Full Text]

 

62. Quantitation of human papillomavirus DNA in plasma of oropharyngeal carcinoma patients.

Cao H, Banh A, Kwok S, Shi X, Wu S, Krakow T, Khong B, Bavan B, Bala R, Pinsky BA, Colevas D, Pourmand N, Koong AC, Kong CS, Le QT. Int J Radiat Oncol Biol Phys. 2012.

[Publisher Full Text]

61. Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.

St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P,Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ Jr, Glenn TC, Green RE, Ray DA.  Genome Biol. 2012.


60. NanoStriDE: normalization and differential expression analysis of NanoString nCounter data.

 Brumbaugh CD, Kim HJ, Giovacchini M, Pourmand N. BMC Bioinformatics. 2011


59. Acceleration of Emergence of Bacterial Antibiotic Resistance in Connected Microenvironments.

Qiucen Zhang, Guillaume Lambert, David Liao, Hyunsung Kim, Kristelle Robin, Chih-kuan Tung, Nader Pourmand, Robert H. Austin. Science, 2011.

[Publisher Full Text]

 

58. Reversible cation response with a protein-modified nanopipette.

Boaz Vilozny, Paolo Actis, R. Adam Seger, Queralt Vallmajo-Martin, Nader Pourmand. Anal. Chem., 2011.

[Publisher Full Text]

 

57. Whole-transcriptome RNA seq analysis from minute amount of total RNA.

Muhammad A. Tariq, Hyunsung J. Kim, Olufisayo Jejelowo, Nader Pourmand. Nucleic Acid Research, 2011.

[Publisher Full Text]

 

56. Reversible Thrombin Detection by Aptamer functionalized STING sensors.

Paolo Actis, Adam Rogers, Jeff Nivala, Boaz Vilozny, R. Adam Seger, Olufisayo Jejelowo, Nader Pourmand. Biosens Bioelectron. 26(11):4503-7, 2011.

[Publisher Full Text]

 

55. Voltage-Controlled Metal Binding on Polyelectrolyte-Functionalized nanopores.

Paolo Actis, Boaz Vilozny, R. Adam Seger, Xiang Li, Olufisayo Jejelowo, Marguerite Rinaudo,  Nader Pourmand. Langmuir 27(10):6528-6533, 2011.

[Publisher Full Text]

 

54. Dynamic control of nanoprecipitation in a nanopipette.

Boaz Vilozny, Paolo Actis, R. Adam Seger , Nader Pourmand. ACS Nano 5(4):3191-7 2011.

[Publisher Full Text]

 

53. Non-enzymatic transfer of sequence information under plausible prebiotic conditions.

Felix Olasagasti, Hyunsung John Kim, Nader Pourmand, David Deamer. Biochimie 93 (3):556-561 2011.

[Publisher Full Text]

 

52. The effect of acute dose charge particle radiation on expression of DNA repair genes in mice.

Muhammad Akram Tariq, Ayodotun Soedipe, Govindarajan Ramesh, Honglu Wu, Ye Zhang, Shishir Shishodia, Nader Pourmand and Olufisayo Jejelowo. Mol. Cell Biochem. 349(1-2):213-218 2011.

[Publisher Full Text]

 

51. UltraSensitive Mycotoxin Detection by STING Sensors.

Paolo Actis, Olufisayo Jejelowo, Nader Pourmand. Biosens Bioelectron. 26(2):333-7  Oct. 15, 2010.

[Publisher Full Text]

 

50. Functionalized nanopipettes: toward label-free, single cell biosensors.

Actis P, Mak AC, Pourmand N. Bioanalytical Reviews, 1(2-4):177-185 2010

[Publisher Full Text]

 

50. Template tailoring: Accurate determination of heterozygous alleles using peptide nucleic acid and dideoxyNTP.

Tariq MA, Pourmand N. Electrophoresis. 31(8):1322-9, 2010

[Publisher Full Text]

 

49. Semi-automated library preparation for high-throughput DNA sequencing platforms.

Farias-Hesson E, Erikson J, Atkins A, Shen P, Davis RW, Scharfe C, Pourmand N.  J Biomed Biotechnol. 2010:617469, 2010

[Publisher Full Text]

 

48. Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples.

Smith AM, Heisler LE, St Onge RP, Farias-Hesson E, Wallace IM, Bodeau J, Harris AN, Perry KM, Giaever G, Pourmand N, Nislow C. Nucleic Acids Res. Jul;38(13):e142 2010.

[Publisher Full Text]

 

47.  Sensitive giant magnetoresistive-based immunoassay for multiplex mycotoxin detection.

Mak AC, Osterfeld SJ, Yu H, Wang SX, Davis RW, Jejelowo OA, Pourmand N. Biosensors and Bioelectronics, 25(7):1635-9, 2010

[Publisher Full Text]

 

46.  Detection of point mutations associated with antibiotic resistance in Pseudomonas aeruginosa.

Gorgani N, Ahlbrand S, Patterson A, Pourmand N, International Journal of Antimicrobial Agents2009

[Publisher Full Text]

 

45.  The relationship between human papillomavirus status and other molecular prognostic markers in head and neck squamous cell carcinomas.

Kong CS, Narasimhan B, Cao H, Kwok S, Erickson JP, Koong A, Pourmand N, Le QT, International Journal of Radiation Oncology*Biology*Physics2009

[Publisher Full Text]

 

44.  Microfabricated magnetic sifter for high-throughput and high-gradient magnetic separation.

Earhart CM, Wilson RJ, White RL, Pourmand N, Wang SX, Journal of Magnetism and Magnetic Materials2009

[Publisher Full Text]

 

43.  p16(INK4A) immunohistochemical staining may be helpful in distinguishing branchial cleft cysts from cystic squamous cell carcinomas originating in the oropharynx.

Pai RK, Erickson J, Pourmand N, Kong CS, Cancer Cytopathol2009

[Publisher Full Text]

 

42. Label-free biosensing with functionalized nanopipette probes.

Umehara S., Karhanek M., Davis R.W., Pourmand N., PNAS, 2009

[PNAS]

41. Relationship between Human PapillomaVirus (HPV) Status, Epidermial Growth Factor Receptor (EGFR) and Phospho - EGFR (pEGFR) Expression in Neck and Squamous Cell Carcinoma (HNSCC).

Filion E.J., Kong C.S., Narasimhan B., Cao H., Erickson J.P., Andersson A., Koong , Pourmand N. , Fredriksson S.,  Le. Q., International Journal of Radiation Oncology*Biology*Physics2008, 72, 1, Supplement 1, Page S23

[Publisher Full Text]

 

40. Multiplex protein assays based on real-time magnetic nanotag sensing.

Osterfeld S. J., Heng Y., Gaster R. S.,  Caramuta S., Xu L., Han S. J., Hall D. A., Wilson R. J., Sun S., White R. L., Davis R. W., Pourmand N and Wang S., PNAS2008

[PNAS]

39. Suspension bead array branch migration displacement assay for rapid short tandem repeat analysis.

Villablanca A., Karhanek M., Caramuta S., Yu H., Webb C.D. and Pourmand N., Electrophoresis2008

[PubMed], [Publisher Full Text]

38. Giant magnetoresistive biochip for DNA detection and HPV genotyping.

Xu L., Yu H., Akhras M.S., Han S.J., Osterfeld S., White R.L., Pourmand N., Wang S.X. , Biosens Bioelectron.2008

[PubMed], [Publisher Full Text]

37. A System for Multiplexed Direct Electrical Detection of DNA Synthesis.
Anderson E.P., Daniels J.S., Yu H., Karhanek M., Lee T.H., Davis R.W. and Pourmand N., Sensors & Actuators: B. Chemical, 2008, 129 79-86.

[Publisher Full Text]

36. Does HPV-status 6-12 months after treatment of high grade dysplasia in the uterine cervix predict long term recurrence?
Strander B., Ryd W., Wallin K.L., Warleby B., Zheng B., Milsom I., Gharizadeh B., Pourmand N., Andersson-Ellstrom A., Eur J Cancer.2007, 43(12),1849-55.

[PubMed], [Publisher Full Text]

35. Patterns of known and novel small RNAs in human cervical cancer.
Lui W.O., Pourmand N., Patterson B.K., Fire A., Cancer Res., 2007, 67(13), 6031-43.

[PubMed], [Publisher Full Text]

34. Label-Free Impedance Biosensors: Opportunities and Challenges.
Daniels J. S., Pourmand N., Electroanalysis2007, 19(12),1239-1257.

[PubMed], [Publisher Full Text]

33. Branch migration displacement assay with automated heuristic analysis for discrete DNA length measurement using DNA microarrays.
Pourmand N., Caramuta S., Villablanca A., Mori S., Karhanek M., Wang S.X., Davis R.W., PNAS2007

[PNAS]

32. PathogenMip Assay: A Multiplex Pathogen Detection Assay.
Akhras M.S., Thiyagarajan S., Villablanca A.C., Davis R.W., Nyren P., Pourmand N., PLoS ONE2007

[PubMed], [Publisher Full Text]

31. A High Density Magnetoresistive Biosensor Array with Drift Compensation Mechanism.
Han S.-J., Yu H., Murmann B., Pourmand N. and Wang. S.X., ISSCC Tech. Dig.2007

[Publisher Full Text]

30. Molecular characterisation of Neisseria gonorrhoeae identifies transmission and resistance of one ciprofloxacin resistant strain.
Unemo M., Sjöstrand A., Akhras M., Gharizadeh B., Lindbäck E., Pourmand N., Wretlind B. and Fredlund H., APMIS2007, 115(3), 231-41

[PubMed], [Publisher Full Text]

29. Pyrosequencing of the DNA gyrase gene in Neisseria species: effective indicator of ciprofloxacin resistance in Neisseria gonorrhoeae.
Lindbäck E., Unemo M., Akhras M., Gharizadeh B., Fredlund H., Pourmand N. and Wretlind B., APMIS2006, 114(12):837-41.

[PubMed], [Publisher Full Text]

28. CMOS Integrated DNA Microarray Based on GMR sensors.
Han S.J., Xu L., Yu H., Wilson R.J., White R.L., Pourmand N. and Wang S.X., IEDM Tech. Dig.2006, 719-722, (Roger A. Haken Best Student Paper Award)

[Publisher Full Text]

27. Rapid and highly informative diagnostic assay for H5N1 influenza viruses.
Pourmand N., Diamond L., Garten R., Erickson J.P., Kumm J., Donis R.O., Davis R.W., PLoS ONE2006

[PubMed], [Publisher Full Text]

26. PathogenMIPer : A tool for the design of molecular inversion probes to detect multiple pathogens.
Thiyagarajan S., Karhanek M., Akhras M., Davis R.W., Pourmand N., BMC Bioinformatics2006, 7(1), 500

[PubMed], [Publisher Full Text]

25. Current Rectification with Poly-l-Lysine-Coated Quartz Nanopipettes.
Umehara S., Pourmand N., Webb C.D., Davis R.W., Yasuda K., Karhanek M., Nano Lett.2006, 6(11),2486-2492.

[PubMed], [Publisher Full Text]

24. Linking Hydrophilic Macromolecules to Monodisperse Magnetite (Fe3O4) Nanoparticles via Trichloro-s-triazine.
Xie J., Xu C., Xu Z., Hou Y.,  Young K. L.,  Wang S. X.,  Pourmand N. and Sun S., Chem. Mater.,2006, 18 (23), 5401 -5403.

[Publisher Full Text]

23. Large-scale pyrosequencing of synthetic DNA: a comparison with results from Sanger dideoxy sequencing.
Gharizadeh B., Herman Z.S., Eason R.G., Jejelowo O., Pourmand N., Electrophoresis2006, 27(15):3042

[PubMed], [Publisher Full Text]

22. Spin valve sensors for ultra sensitive detection of super paramagnetic nanoparticles for biological applications. 
Li G., Sun S., Wilson R. J., White R. L., Pourmand N., Wang S. X., Sensors and Actuators A2006,  126, 98-106

[Publisher Full Text]

21. One-Pot Synthesis of Mono-disperse Iron Oxide Nanoparticles for Potential Biomedical Applications. 
Xie J., Peng S., Brower N., Pourmand N., Wang S. X., Sun S., Pure Appl. Chem.2006, 78(5), 1003-1014

[Publisher Full Text]

20. Direct electrical detection of DNA synthesis.
Pourmand N., Karhanek M., Persson H. J., Webb C. B., Lee T. H. , Zahradníková A., Davis R. W., PNAS2006, 103(17):6466-70

[PNAS]

19. Methodological improvements of pyrosequencing technology.
Gharizadeh B., Akhras M., Nourizad N., Ghaderi M., Yasuda K., Nyrén P., Pourmand N. 
J Biotechnol.2006, 124(3):504-11

[PubMed], [Publisher Full Text]

18. Sentinel-base DNA genotyping using multiple sequencing primers for high-risk human papillomaviruses.
Gharizadeh B., Zheng B., Akhras M., Ghaderi M., Jejelowo O., Strander B., Nyrén P., Wallin K.-L., Pourmand N., Mol Cell Probes2006, 20(3-4):230-8

[PubMed], [Publisher Full Text]

17. Detection of gyrA mutations associated with ciprofloxacin resistance in Neisseria gonorrhoeae by rapid and reliable pre-programmed short DNA sequencing.
Gharizadeh B., Akhras M., Unemo M., Wretlind B., Nyrén P., Pourmand N., Int J Antimicrob Agents.,2005, 26(6):486-90.

[PubMed], [Publisher Full Text]

16. Fisher's theorems for multivariable, time- and space-dependent systems, with applications in population genetics and chemical kinetics.
Vlad M. O., Szedlacsek S. E., Pourmand N., Cavalli-Sforza L., Oefner P., Ross J., PNAS2005,102,9848-53

[PNAS]

15. Bioluminescence regenerative cycle (BRC) system: theoretical considerations for nucleic acid quantification assays.
Hassibi A., Contag C., Vlad M. O., Hafezi M., Lee T. H., Davis R. W., Pourmand N., Biophys Chem.2005, 116, 175-85

[PubMed], [Publisher Full Text]

14. Type-specific multiple sequencing primers: a novel strategy for reliable and rapid genotyping of human papillomaviruses by pyrosequencing technology.
Gharizadeh B., Oggionni M., Zheng B., Akom E., Pourmand N., Ahmadian A., Wallin K.-L., Nyrén P., J Mol Diagn.2005, 7, 198-205

[PubMed], [Publisher Full Text]

13. Single DNA molecule detection using nanopipettes and nanoparticles.
Karhanek M., Kemp J. T., Pourmand N., Davis R. W., Webb C. D., Nano Lett.2005, 5,403-407

[PubMed], [Publisher Full Text]

12. DNA-functionalized MFe2O4 (M = Fe, Co, or Mn) nanoparticles and their hybridization to DNA-functionalized surfaces.
Robinson D. R., Persson H. J., Zeng H., Li G., Pourmand N., Sun S. ,Wang S. X., Langmuir2005, 21, 3096-3103

[PubMed], [Publisher Full Text]

11. Characterization of synthetic DNA bar codes in Saccharomyces cerevisiae gene-deletion strains.
Eason R. G., Pourmand N.,Tongprasit W., Herman Z. S., Anthony K., Jejelowo O., Davis R. W., Stolc V., 
PNAS2004, 101, 11046-11051

[PNAS]

10. Genotyping African haplotypes in ATM using a co-spotted single-base extension assay.

Jain M., Thorsteston Y. R., Faulkner D. M., Pourmand N., Jones T., Au M., Oefner P. J., White K. P., Davis R. W., Hum. Mutat.2003, 22, 214-221

[PubMed], [Publisher Full Text]

9. Determination of hepatitis C virus genotype by Pyrosequencing.

Elahi E., Pourmand N., Chaung R., Rofoogaran A., Boisver J., Samimi-Rad K., Davis R. W., Ronaghi M., J Virol. Methods2003, 109, 171-176.

[PubMed], [Publisher Full Text]

8. Bioluminescence Regenerative Cycle (BRC) System for Nucleic Acid Quantification Assays.
Hassibi A., Lee T. H., Davis R. W. and Pourmand N.,Proc. of SPIE2003, 4966, 65-75

[Publisher Full Text]

7. Pyrosequencing: an accurate detection platform for single nucleotide polymorphisms.
Fakhrai-Rad H., Pourmand N., Ronaghi M., Hum Mutat., 2002,19, 479-485

[PubMed], [Publisher Full Text]

6. Multiplex Pyrosequencing.
Pourmand N., Elahi E., Davis R. W., Ronaghi M., Nucleic Acids Res.2002, 30(7)

[PubMed], [Publisher Full Text]

5. Method enabling fast partial sequencing of cDNA clones.
Nordström T., Gharizadeh B., Pourmand N., Nyren P., Ronaghi M., Anal Biochem., 2001, 292, 266-271

[PubMed], [Publisher Full Text]

4. Ro 52kD autoantibodies are detected in a subset of ANA-negative sera.
Pourmand N., Blomberg S., Rönnblom L., Karlsson-Parra A., Pettersson I., Wahren-Herlenius M., Scand J Rheumatol.2000, 29, 116-123

[PubMed]

3. Ro/SSA and La/SSB specific IgA autoantibodies in serum of patients with Sjögren's syndrome and systemic lupus erythematosus.
Pourmand N., Wahren-Herlenius M., Gunnarsson I., Svenungsson E., Löfström B., Ioannou Y., Isenberg D. A., Magnusson C. G., Ann Rheum Dis.1999, 58,623-629

[PubMed], [Publisher Full Text]

2. Intracellular localisation of the Ro 52kD auto-antigen in HeLa cells visualised with green fluorescent protein chimeras.
Pourmand N., Blange I., Ringertz N., Pettersson I., Autoimmunity1998, 28, 225-233

[PubMed]

1. The Zn2+ binding domain of the human Ro 52 kDa protein is a target for conformation-dependent autoantibodies.
Pourmand N., Pettersson I., J Autoimmun.1998, 11(1), 11-7

[PubMed], [Publisher Full Text]